White mold in soybeans: risk, timing and fungicide ROI
When white mold (Sclerotinia) pays to spray in soybeans: risk factors, the R1–R2 window, FRAC groups that work, the CPN ROI calculator and Sporecaster.
- Where:
- Upper Midwest, Ontario, Manitoba
- When:
- July–August
- Updated:
- October 19, 2026
- Reading time:
- 7 min
Short answer
White mold (Sclerotinia stem rot, Sclerotinia sclerotiorum) infects soybeans through senescing flowers, so the fungicide has to be on before infection, not after symptoms. The Crop Protection Network's efficacy ratings for white mold are based on R1 to R2 applications, and efficacy drops at R3 or later or once lesions are visible. Spray only where three things coincide: a field history of white mold, a canopy that is closing at flowering, and cool, wet or humid weather during bloom. The strongest single-active options are boscalid (FRAC 7) and fluazinam (FRAC 29); strobilurin-only products are poor or unlabelled for this disease. Run the numbers in the CPN White Mold ROI Calculator and check apothecia risk with the Sporecaster app before committing to one or two passes.
Symptoms and where to look
Infection happens at flowering, but you will not see it then. Stem symptoms show up from R3 to R6, three to four weeks after bloom, and most fields are first noticed in August. Look at the nodes on the lower and middle stem, typically 6 to 14 inches (15 to 36 cm) above the soil, where a dead flower sat in the leaf axil. Lesions start gray to white and water-soaked, spread up and down from the node, and girdle the stem. In humid weather the lesion is covered in white, cottony mycelium. Later the stem bleaches, turns pithy and shreds, and hard black sclerotia form on and inside the stem. Leaves above the lesion turn gray-green between the veins, wilt and die, but stay attached. Infected pods carry small, chalky seed, and sclerotia can replace seeds entirely.
Look-alikes and how to tell them apart
Several stem and wilt diseases kill soybeans in patches in August. Split the stem.
| Disease | What the stem shows | What white mold shows instead |
|---|---|---|
| Brown stem rot | Pith browned at the nodes, outside of stem healthy | Bleached external lesion with white mold and black sclerotia |
| Sudden death syndrome | Taproot cortex brown, pith white, no stem lesion; leaflets drop, petioles remain | Lesion at a mid-stem node, leaves stay attached |
| Phytophthora stem rot | Chocolate-brown lesion from the soil line upward | Lesion starts at a node above the soil line |
| Stem canker | Sunken red-brown canker at a node, no fluffy growth | White mycelium and sclerotia |
Black sclerotia, outside or inside the stem, are diagnostic.
Conditions that favour it
The fungus survives as sclerotia in the soil. Most die within three to four years between soybean crops, but buried sclerotia can persist up to seven years, and only those within the top 1 to 2 inches (2.5 to 5 cm) germinate. Germination produces apothecia, small tan cup-shaped mushrooms, when the soil under the canopy is moist, cool, about 59 to 68°F (15 to 20°C), and shaded. Apothecia release airborne spores that land on senescing flowers; infection then needs free moisture and prolonged air temperatures below about 85°F (29°C) with frequent rain or high humidity.
That makes canopy closure at flowering the single most important risk factor. Anything that closes the canopy early raises risk: narrow rows, high populations, early planting, high fertility, tall lush varieties and irrigation during bloom. Field history matters because the inoculum is already there; the fungus does not blow in from neighbours in any quantity. Other host crops (dry beans, peas, sunflower, canola and other brassicas) and broadleaf weeds such as lambsquarters, pigweed, ragweed and velvetleaf add to the sclerotia bank.
Scouting and risk tools
There is no in-season threshold for white mold because the spray decision has to be made before infection. Scouting is a risk assessment at R1 to R2: walk the field at first flower, look under the canopy for apothecia on moist soil, note how close the rows are to closing, and check the two-week forecast.
Sporecaster, the University of Wisconsin smartphone app, formalises this. You enter the date, whether flowers are present, the percent canopy row closure, and whether the field is non-irrigated, irrigated on 15-inch (38 cm) rows or irrigated on 30-inch (76 cm) rows. It combines that with weather data to predict the probability that apothecia are present and returns a spray recommendation. In validation across 60 commercial fields in Wisconsin, Michigan and Nebraska it was 81.8 percent accurate across R1 to early R4. Run it every few days from R1 through R3 and follow the app's own guidance for the spray trigger.
The CPN White Mold ROI Calculator answers the money question. It is built from multi-year, university-run fungicide trials across the United States and Ontario. You enter the treatment cost, the disease severity you expect, and your yield and price assumptions, and it returns the estimated net benefit and break-even probability by product. It is not a forecast; it tells you what a given level of disease has been worth controlling in the trial data. Include the applicator charge or your own machinery cost; depreciation is real even when you spray it yourself.
Management
Variety is the first lever. No variety is resistant, but tolerance ratings range from moderate to very susceptible, and in a field with history that range matters. Shorter, lodging-resistant varieties keep the canopy more open.
Row spacing and population come next. Purdue suggests 15-inch rows or wider and 125,000 to 150,000 plants per acre (310,000 to 370,000 per hectare) in infested fields; Nebraska points to 30-inch rows over 15-inch to slow canopy closure. Both cost some yield potential in a clean field, so apply them where history justifies it.
Rotate two to three years away from soybean and other host crops, using corn and small grains, and control broadleaf hosts in the rotation years. Tillage results are inconsistent: deep ploughing buries sclerotia but later tillage brings them back, and Iowa State research found long-term no-till carries a smaller risk than conventional tillage because undisturbed sclerotia near the surface decline. Harvest infested fields last, clean the combine, and do not keep seed from them.
Foliar fungicides, with the CPN efficacy rating for white mold:
| Active ingredient | FRAC group | CPN rating for white mold | Note |
|---|---|---|---|
| Boscalid (e.g., Endura) | 7 | Very good | Single application at R1 performed well in Wisconsin trials |
| Fluazinam (e.g., Omega) | 29 | Good | Not labelled for frogeye |
| Picoxystrobin (e.g., Aproach) | 11 | Good | Rating based on two applications, R1 and R3 |
| Fluopyram + prothioconazole (e.g., Propulse) | 7 + 3 | Good | |
| Prothioconazole | 3 | Fair | 2(ee) white mold recommendation in New York only |
| Tetraconazole, thiophanate-methyl | 3, 1 | Fair | |
| Azoxystrobin | 11 | Poor | |
| Pyraclostrobin and most FRAC 11-based premixes | 11 | Not labelled or poor | Wrong disease for these products |
A single pass goes on at R1 to R2; a two-pass program in a high-history field starts at late R1 with the second about 14 days later. Coverage matters more than for leaf diseases because the target is flowers low in a closing canopy, so use the high end of the label water volume. Rates, intervals and water volumes are on the label registered in your state or province.
Ontario and Manitoba growers: US registrations do not apply in Canada. Check the Health Canada PMRA label (PCP number) for the product and the white mould claim. OMAFRA's inoculated Ontario trials under heavy pressure found all registered products gave a yield benefit, from 3.8 to 17.5 bu/ac (0.26 to 1.18 t/ha), with Cotegra (boscalid + prothioconazole, FRAC 7 + 3) and Allegro (fluazinam, FRAC 29) among the products named as effective in a single R2 application.
When a spray pays and when it does not
Each 10 percent increase in plant incidence costs roughly 2 to 5 bu/ac (0.13 to 0.34 t/ha), and Iowa State considers yield risk minimal below 20 percent incidence. The question is whether this field, this year, is headed for 20 percent or more.
A spray is likely to pay where the field has had white mold before, the canopy is closing at R1, Sporecaster shows apothecia risk, and the two-week forecast is cool and wet. In Ontario's inoculated high-pressure trials every registered product gave a yield benefit, and a two-pass program has been the most consistent under those conditions.
A spray is unlikely to pay where there is no history (the inoculum is not there), where the canopy is open at flowering in 30-inch rows, where flowering coincides with hot dry weather, or where the decision is being made at R3 or later because symptoms have appeared. Fungicides do not cure infected stems. In those fields the money is better spent on next year's variety, row spacing and rotation.
Sources
- White Mold of Soybean — Crop Protection Network encyclopedia
- Sclerotinia Stem Rot (White Mold) — Iowa State University Extension
- Diseases of Soybean: White Mold (BP-43-W) — Purdue Extension
- White Mold (Sclerotinia Stem Rot) of Soybean — SDSU Extension
- Fungicide Efficacy for Control of Soybean Foliar Diseases (CPN-1019) — Crop Protection Network
- White Mold ROI Calculator — Crop Protection Network
- High Risk of White Mould in 2021 — Field Crop News (OMAFRA)
Label first. Always read and follow label directions before buying or using a pesticide, and follow all federal, state or provincial and local regulations — the label is the law. In the US, use products registered by EPA and approved in your state; in Canada, use only products registered by Health Canada's PMRA (PCP number) and check the current label in the PMRA label search. Products, rates and restrictions differ between countries and between states and provinces.
This guide is educational and does not replace a site-specific recommendation from your agronomist or Certified Crop Adviser. Reference to a product is not an endorsement over similar products; users assume responsibility for use in accordance with current label directions. Last updated October 19, 2026.